FLUORESCENT IN SITU HYBRIDIZATION ANALYSIS OF CHROMOSOMAL MICRO-DUPLICATIONS AND MICRO-DELETIONS IN CLINICAL GENETICS
Sarri C*
*Corresponding Author: Dr. Catherine Sarri, Genetics Department, Institute of Child Health, in “Aghia Sophia” Children’s Hospital, Thivon and M. Asias, Goudi, 115 27 Athens, Greece; Tel: +3 0 210 7467789; Fax: +3 0 210 7700111; E-mail: inchildh@otenet.gr
page: 73

NEW MICRO-DELETION SYNDROME?

During the last few years, new cases with certain micro-deletions and micro-duplications have been de­scribed, revealed by FISH analysis and attributed to the subtelomeric regions of the chromosomes. New genetic syndromes are being added to the already existing cata­logue of micro-deletion and micro-duplication syndromes. Thus far, at least 20 cases have been published which can be attributed to a terminal 22q13 deletion syndrome, and may represent a recognizable phenotype with the follow­ing main features: normal or advanced growth, signifi­cantly delayed speech, pervasive behaviors, and minor facial dysmorphism [37].

Subtelomeres. Subtelomeric DNA probes identify DNA regions at a distance of 30-450 kb from the very end of the chromosome. Subtelomeric abnormalities are found in 7-10% of patients with a positive family history, dys­morphic features and mild or severe mental retardation of unknown origin [38]. Specific phenotypes for 1pter [39], 1qter (40) and 2qter [41,42] micro-deletions are recog­nized in many genetic centers (Fig. 5). Research projects of couples with more than five spontaneous abortions and normal karyotypes are in progress [43].

Subtelomeres That are Available. Ready to use DNA subtelomeric probes are sold for 41 out of 48 human chro­mosome subtelomeres. The subtelomeric probes of the short (p) arms of the five acrocentric chromosomes are not available, while the subtelomeric probes of the short and long arms of the X and Y chromosomes have the same sequence, so we cannot distinguish them.

Basic Rules for the Study of Micro-Deletions and Micro-Duplications in Human Chromosomes. 1) Careful selection of the patients from the clinical geneticist. 2) Good knowledge and experience of the FISH technique by a responsible cytogeneticist. 3) A laboratory equipped with FISH probes, fluorescent microscope with special filters, and automated analysis FISH system. 4) A molecu­lar geneticist with good knowledge and experience and who might proceed to molecular analysis if this is needed.

 

Figure 4. a, b and c: Wolf syndrome with a micro-deletion; d: Wolf syndrome with a micro-duplication.

 

 

 

 

Figure 5. Chromosome 5 subtelomeres.

 

 

 

Table 1. Syndromes with micro-duplications.

 

 

Syndromes with
Micro-Duplications

 

Chromosomal
Region

 

Charcot-Marie-Tooth type 1A

 

17(p11.2)

 

Down’s with a normal karyotype

 

21(q21-q22.1)

 

Smith-Magenis (10% of patients)

 

17(p11.2)

 

Beckwith-Wiedemann

 

11(p15.5)

 

Table 2. Syndromes with micro-deletions.

 

Syndromes with
Micro-Deletions

 

Chromosomal
Region

 

Williams-Beuren

 

7(q11.23)

 

Di-George (CATCH 22)

 

22(q11.2)

 

Velocardiofacial (CATCH 22)

 

22(q11.2)

 

Angelman

 

15(q11.2-q12)

 

Prader-Willi

 

15(q11.2-q12)

 

Pitt-Rogers-Danks

 

4(p16.3)

 

Wolf-Hirschhorn

 

4(p16.3)

 

Miller-Dieker

 

17(p13.3)

 

Cri-du-Chat

 

5(p15.2)

 

Smith-Magenis (90% of patients)

 

17(p11.2)

 

Steroid sulfatase deficiency

 

X(p22.3)

 

Kallmann

 

X(p22.3)

 

 




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