
EXPLORING CANDIDATE GENES FOR EPILEPSY
BY COMPUTATIONAL DISEASE-GENE
IDENTIFICATION STRATEGY Sha Y, Liu Q, Wang Y, Dong C, Song L *Corresponding Author: Ying Sha, Department of Neurology, First Hospital of Jilin University,
Jilin Province, People’s Republic of China; Tel.: +86-1387-878-9232; Fax: +86-1387-778-7078;
E-mail: shaying2010@ 126.com page: 35
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REFERENCES
1. Huang QY, Li GHY, Cheung WMW, Song
YQ. Prediction of osteoporosis candidate genes by
computational disease-gene identification strategy.
J Hum Genet. 2008; 53(7): 644-655.
2. Teber ET, Liu JY, Ballouz S, Fatkin D,
Wouters MA. Comparison of automated candidate
gene prediction systems using genes implicated in
type 2 diabetes by genome-wide association studies.
BMC Bioinformatics. 2009; 10(1): S69.
3. Elbers CC, Onland-Moret NC, Franke L,
Niehoff AG, van der Schouw YT, Wijmenga C. A
strategy to search for common obesity and type 2
diabetes genes. Trends Endocrin Met. 2006; 18(1):
19-26.
4. Tiffin N, Adie E, Turner F, Brunner H, van
Driel M, Oti M, Lopez-Bigas N, Ouzounis C, Perez-
Iratxeta C, Andrade-Navarro M, Adeyemo A, Patti
M, Semple CA, Hide W. Computational disease
gene identification: a concert of methods prioritizes
type 2 diabetes and obesity candidate genes. Nucleic
Acids Res. 2006; 34(10): 3067-3081.
5. Durner M, Keddache MA, Tomasini L,
Shinnar S, Resor SR, Cohen J, Harden C, Moshe
SL, Rosenbaum D, Kang H, Ballaban-Gil K, Hertz
S, Labar DR, Luciano D, Wallace S, Yohai D,
Klotz I, Dicker E, Greenberg DA. Genome scan
of idiopathic generalized epilepsy: evidence for
major susceptibility gene and modifying genes
influencing the seizure type. Ann Neurol. 2001;
3(3): 328-335.
6. Pinto D, Westland B, de Haan GJ, Rudolf G,
da Silva BM, Hirsch E, Lindhout D, Trenité DG,
Koeleman BP. Genome-wide linkage scan of epilepsyrelated
photoparoxysmal electroencephalographic
response: evidence for linkage on chromosomes 7q32
and 16p13. Hum Mol Genet. 2005; 14(1): 171-178. 7. Delgado-Escueta AV. Advances in genetics of
juvenile myoclonic epilepsies. Epilepsy Curr. 2007;
7(3): 61-67.
8. Kapoor A, Ratnapriya R, Kuruttukulam
G, Anand A. A novel genetic locus for juvenile
myoclonic epilepsy at chromosome 5q12-q14. Hum
Genet. 2007; 121(6): 655-662.
9. Yue P, Melamud E, Moult J. SNPs3D:
candidate gene and SNP selection for association
studies. BMC Bioinformatics. 2006; 7: 166.
10. Adie EA, Adamns RR, Evans KL, Porteous
DJ, Pickard BS. SUSPECTS: enabling fast and
effective prioritization of positional candidates.
Bioinformatics. 2006; 22(6): 773-774.
11. Yoshida Y, Makita Y, Heida N, Asano S,
Matsushima A, Ishii M, Mochizuki Y, Masuya
H, Wakana S, Kobayashi N, Toyoda T. PosMed
(Positional Medline): prioritizing genes with
an artificial neural network comprising medical
documents to accelerate positional cloning.
Nucleic Acids Res. 2009; 37(Web Server issue):
W147-W152.
12. Köhler S, Bauer S, Horn D, Robinson
PN. Walking the interactome for prioritization of
candidate disease genes. Am J Hum Genet. 2008;
82(4): 949-958.
13. Busch RM, Lineweaver TT, Naugle RI, Kim
KH, Gong Y, Tilellli CQ, Prayson RA, Bingaman W,
Najm IM, Diaz-Arrastia R. ApoE-ε4 is associated with
reduced memory in long-standing intractable temporal
lobe epilepsy. Neurology. 2007; 6(6): 409-414.
14. Chapin JS, Busch RM, Janigro D, Dougherty
M, Tillelli CQ, Lineweaver TT, Naugle RI, Diaz-
Arrastia R, Najm IM. APOE-ε4 is associated with
postictal confusion in patients with medically
refractory temporal lobe epilepsy. Epilepsy Res.
2008; 81(2-3): 220-224.
15. Salzmann A, Perroud N, Crespel A,
Lambercy C, Malafosse A. Candidate genes for
temporal lobe epilepsy: a replication study. Neurol
Sci. 2008; 29(6): 397-403.
16. Thornblad TA, Elliott KS, Jowett J, Visscher
PM. Prioritization of positional candidate genes
using multiple web-based software tools. Twin Res
Hum Genet. 2007; 10(6): 861-870.
17. van Driel MA, Cuelenaere K, Kemmeren PP,
Leunissen JA, Brunner HG, Vriend G. GeneSeeker:
extraction and integration of human disease-related
information from web-based genetic databases.
Nucleic Acids Res. 2005; 33(Web Server issue):
W758-W761.
18. Prioritizer: http://pcdoeglas.med.rug.nl/
prioritizer/.
19. Perez-Iratxeta C, Wjst M, Bork P, Andrade
MA. G2D: A tool for mining genes associated to
disease. BMC Genet. 2005; 6: 45.
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