
MUTATION AND HAPLOTYPE ANALYSIS OF THE CFTR GENE IN CYSTIC FIBROSIS FAMILIES FROM BASHKORTOSTAN Korytina G.F., Victorova T. V., Khusnutdinova E. K.
Russian Academy of Sciences,
Institute of Biochemistry and Genetics, Ufa, Russia *Corresponding Author: Ph.D Korytina G. F, Prospect Oktyabrya, 69,
450054, Ufa, Russia; Tel +07(3472)355255; Fax: +07(3472)356088;
E-mail: Guly_Kory@mail.ru page: 41
|
MATERIALS AND METHODS
Materials. We have analysed a total of 125 unrelated patients and members of their families (375 individuals) from medical genetic consultation center of the Republican Hospital, Republican Children's Hospital, and Emergency Hospital, Ufa, Bashkortostan for molecular CF analysis from 2000 year. But only 80 unrelated CF families (240 individuals), with least one affected child with a confirmed diagnosis of CF based on clinical features and positive sweat test (CI>60 mmol/L) are included to CF registry of Bashkortostan.
Moreover, we have analysed 35 unrelated healthy families (105 individuals).
Methods. Genomic DNA was isolated from 10 ml of peripheral blood by phenol-chloroform extraction [14].
CFTR gene mutations analysis.We have screened 160 CF chromosomes for 18 previously reported mutations (delF508, 1677delTA CFTRdele2,3(21kb), 394delTT, 1154insTC, R347P, R334W, G542X, G551D, R553X, S549N, 2184insA, 2143delT, S1196X, 3737delA, 3849+10kbC → T, W1282X, N1303K) and we also used
SSCP-analysis for exons 3, 7, 10, 11, 13, 19 and 20, us described previously [15]. All DNA samples displaying a shift from normal behaviour were sequensed us described previously [15].
Analysis of five polymorphic loci. Genomic DNA from 345 individuals was amplified by polymerase chain reaction (PCR) according to standart protocol [ 15-17]. The two diallelic SNP markers - M470V/ HphI and TUB20/PvuI are located in exon 10 and intron 20. The markers were analysed by differences in the mobility of PCR products on polyacrylamide gels.
The microsatellites IVS6aGATT, IVS8CA and IVS17CA were studied us described previously [18-20 ]. The size of STR alleles were determined using control samples with known allelic sizes that had been given by Professor V.S. Baranov (Institute for Obstetrics and Gynecology, St. Peterburg).
All of two SNP (M470V, TUB20) and three STR (IVS6aGATT, IVS8CA, IVS17CA) intragenichaplotypes were ascertained from the individual pedigrees. The measure of haplotype frequency and diversity was calculated using the ARLEQUIN v. 2.0 software program [21]. Comparison of the haplotype frequency on normal and mutant chromosomes was carried out using χ2 -test with Yates' correction [21-23].
|
|
|
|



 |
Number 27 VOL. 27 (2), 2024 |
Number 27 VOL. 27 (1), 2024 |
Number 26 Number 26 VOL. 26(2), 2023 All in one |
Number 26 VOL. 26(2), 2023 |
Number 26 VOL. 26, 2023 Supplement |
Number 26 VOL. 26(1), 2023 |
Number 25 VOL. 25(2), 2022 |
Number 25 VOL. 25 (1), 2022 |
Number 24 VOL. 24(2), 2021 |
Number 24 VOL. 24(1), 2021 |
Number 23 VOL. 23(2), 2020 |
Number 22 VOL. 22(2), 2019 |
Number 22 VOL. 22(1), 2019 |
Number 22 VOL. 22, 2019 Supplement |
Number 21 VOL. 21(2), 2018 |
Number 21 VOL. 21 (1), 2018 |
Number 21 VOL. 21, 2018 Supplement |
Number 20 VOL. 20 (2), 2017 |
Number 20 VOL. 20 (1), 2017 |
Number 19 VOL. 19 (2), 2016 |
Number 19 VOL. 19 (1), 2016 |
Number 18 VOL. 18 (2), 2015 |
Number 18 VOL. 18 (1), 2015 |
Number 17 VOL. 17 (2), 2014 |
Number 17 VOL. 17 (1), 2014 |
Number 16 VOL. 16 (2), 2013 |
Number 16 VOL. 16 (1), 2013 |
Number 15 VOL. 15 (2), 2012 |
Number 15 VOL. 15, 2012 Supplement |
Number 15 Vol. 15 (1), 2012 |
Number 14 14 - Vol. 14 (2), 2011 |
Number 14 The 9th Balkan Congress of Medical Genetics |
Number 14 14 - Vol. 14 (1), 2011 |
Number 13 Vol. 13 (2), 2010 |
Number 13 Vol.13 (1), 2010 |
Number 12 Vol.12 (2), 2009 |
Number 12 Vol.12 (1), 2009 |
Number 11 Vol.11 (2),2008 |
Number 11 Vol.11 (1),2008 |
Number 10 Vol.10 (2), 2007 |
Number 10 10 (1),2007 |
Number 9 1&2, 2006 |
Number 9 3&4, 2006 |
Number 8 1&2, 2005 |
Number 8 3&4, 2004 |
Number 7 1&2, 2004 |
Number 6 3&4, 2003 |
Number 6 1&2, 2003 |
Number 5 3&4, 2002 |
Number 5 1&2, 2002 |
Number 4 Vol.3 (4), 2000 |
Number 4 Vol.2 (4), 1999 |
Number 4 Vol.1 (4), 1998 |
Number 4 3&4, 2001 |
Number 4 1&2, 2001 |
Number 3 Vol.3 (3), 2000 |
Number 3 Vol.2 (3), 1999 |
Number 3 Vol.1 (3), 1998 |
Number 2 Vol.3(2), 2000 |
Number 2 Vol.1 (2), 1998 |
Number 2 Vol.2 (2), 1999 |
Number 1 Vol.3 (1), 2000 |
Number 1 Vol.2 (1), 1999 |
Number 1 Vol.1 (1), 1998 |
|
|